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BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
16 years 1 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
PPOPP
2006
ACM
16 years 1 months ago
Fast and transparent recovery for continuous availability of cluster-based servers
Recently there has been renewed interest in building reliable servers that support continuous application operation. Besides maintaining system state consistent after a failure, o...
Rosalia Christodoulopoulou, Kaloian Manassiev, Ang...
GECCO
2008
Springer
182views Optimization» more  GECCO 2008»
15 years 8 months ago
Scaling ant colony optimization with hierarchical reinforcement learning partitioning
This paper merges hierarchical reinforcement learning (HRL) with ant colony optimization (ACO) to produce a HRL ACO algorithm capable of generating solutions for large domains. Th...
Erik J. Dries, Gilbert L. Peterson
BMCBI
2004
91views more  BMCBI 2004»
15 years 7 months ago
SIGI: score-based identification of genomic islands
Background: Genomic islands can be observed in many microbial genomes. These stretches of DNA have a conspicuous composition with regard to sequence or encoded functions. Genomic ...
Rainer Merkl
PKDD
2010
Springer
152views Data Mining» more  PKDD 2010»
15 years 5 months ago
CET: A Tool for Creative Exploration of Graphs
We present a tool for interactive exploration of graphs that integrates advanced graph mining methods in an interactive visualization framework. The tool enables efficient explorat...
Stefan Haun, Andreas Nürnberger, Tobias K&oum...