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CLUSTER
2003
IEEE
16 years 25 days ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
181
Voted
TREC
2003
15 years 9 months ago
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
k gene annotations. Our indexing machinery produces per indexed MEDLINE abstract a list of concepts with an accompanying weight, termed a fingerprint. Searching is done by matching...
Rob Jelier, Martijn J. Schuemie, C. Christiaan van...
BMCBI
2005
152views more  BMCBI 2005»
15 years 7 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
BMCBI
2008
128views more  BMCBI 2008»
15 years 7 months ago
In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer
Background: The analysis of expressed sequence tags (EST) offers a rapid and cost effective approach to elucidate the transcriptome of an organism, but requires several computatio...
Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair...
212
Voted
ICC
2009
IEEE
151views Communications» more  ICC 2009»
16 years 2 months ago
Improved Vector Perturbation with Modulo Loss Reduction for Multiuser Downlink Systems
— In this paper, we present an improved precoding technique which reduces a modulo loss in vector perturbation (VP) with low complexity for the downlink of a multiuser multiple-i...
Hyeon-Seung Han, Seokhwan Park, Inkyu Lee