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» Accurate detection of very sparse sequence motifs
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CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
16 years 4 days ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara
ICPR
2008
IEEE
16 years 7 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic
ALMOB
2006
155views more  ALMOB 2006»
15 years 6 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...
PRL
2008
142views more  PRL 2008»
15 years 6 months ago
Highly accurate error-driven method for noun phrase detection
We present a new model for detection of noun phrases in unrestricted text, whose most outstanding feature is its flexibility: the system is able to recognize noun phrases similar ...
Lourdes Araujo, Jose Ignacio Serrano
BIOINFORMATICS
2012
13 years 9 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...