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» Algorithms and Data Structures for Computer Topology
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OPODIS
2007
15 years 8 months ago
Peer to Peer Multidimensional Overlays: Approximating Complex Structures
Peer to peer overlay networks have proven to be a good support for storing and retrieving data in a fully decentralized way. A sound approach is to structure them in such a way tha...
Olivier Beaumont, Anne-Marie Kermarrec, Etienne Ri...
CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
16 years 17 days ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
227
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BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
179
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ACSC
2002
IEEE
16 years 11 hour ago
Suffix Vector: Space- and Time-Efficient Alternative to Suffix Trees
Suffix trees are versatile data structures that are used for solving many string-matching problems. One of the main arguments against widespread usage of the structure is its spac...
Krisztián Monostori, Arkady B. Zaslavsky, H...
206
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SIAMMAX
2010
224views more  SIAMMAX 2010»
15 years 1 months ago
Robust Approximate Cholesky Factorization of Rank-Structured Symmetric Positive Definite Matrices
Abstract. Given a symmetric positive definite matrix A, we compute a structured approximate Cholesky factorization A RT R up to any desired accuracy, where R is an upper triangula...
Jianlin Xia, Ming Gu