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ICCS
2001
Springer
15 years 11 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
WAIM
2007
Springer
16 years 1 months ago
Improvements of HITS Algorithms for Spam Links
The HITS algorithm proposed by Kleinberg is one of the representative methods of scoring Web pages by using hyperlinks. In the days when the algorithm was proposed, most of the pag...
Yasuhito Asano, Yu Tezuka, Takao Nishizeki
KDD
2004
ACM
138views Data Mining» more  KDD 2004»
16 years 7 months ago
IDR/QR: an incremental dimension reduction algorithm via QR decomposition
Dimension reduction is a critical data preprocessing step for many database and data mining applications, such as efficient storage and retrieval of high-dimensional data. In the ...
Jieping Ye, Qi Li, Hui Xiong, Haesun Park, Ravi Ja...
SIGCSE
2004
ACM
101views Education» more  SIGCSE 2004»
16 years 20 days ago
Effective features of algorithm visualizations
Many algorithm visualizations have been created, but little is known about which features are most important to their success. We believe that pedagogically useful visualizations ...
Purvi Saraiya, Clifford A. Shaffer, D. Scott McCri...