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RECOMB
1997
Springer
15 years 11 months ago
A branch-and-cut algorithm for multiple sequence alignment
Multiple sequence alignment is an important problem in computational biology. We study the Maximum Trace formulation introduced by Kececioglu [?]. We first phrase the problem in ...
Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kur...
BMCBI
2010
135views more  BMCBI 2010»
15 years 7 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
TMC
2008
192views more  TMC 2008»
15 years 7 months ago
A Bidding Algorithm for Optimized Utility-Based Resource Allocation in Ad Hoc Networks
Abstract-- This article proposes a scheme for bandwidth allocation in wireless ad hoc networks. The quality of service (QoS) levels for each end-to-end flow are expressed using a r...
Calin Curescu, Simin Nadjm-Tehrani
JPDC
2007
167views more  JPDC 2007»
15 years 7 months ago
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
Diana H. P. Low, Bharadwaj Veeravalli, David A. Ba...
COCOON
2005
Springer
16 years 1 months ago
Server Allocation Algorithms for Tiered Systems
Many web-based systems have a tiered application architecture, in which a request needs to transverse all the tiers before finishing its processing. One of the most important QoS...
Kamalika Chaudhuri, Anshul Kothari, Rudi Pendaving...