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Aligning alignments exactly
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Pairwise alignment incorporating dipeptide covariation
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Stepwise detection of recombination breakpoints in sequence alignments
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Fold recognition by combining profile-profile alignment and support vector machine
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Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-se...
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A new progressive-iterative algorithm for multiple structure alignment
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RDP2: recombination detection and analysis from sequence alignments
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Darren P. Martin, C. Williamson, David Posada
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