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ISMB
1993
15 years 8 months ago
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families
A Bayesian method for estimating the amino acid distributions in the states of a hidden Markov model (HMM) for a protein familyor the columns of a multiple alignment of that famil...
Michael Brown, Richard Hughey, Anders Krogh, I. Sa...
BMCBI
2008
93views more  BMCBI 2008»
15 years 7 months ago
SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis
Background: Slow-fast analysis is a simple and effective method to reduce the influence of substitution saturation, one of the causes of phylogenetic noise and long branch attract...
Martin Kostka, Magdalena Uzlikova, Ivan Cepicka, J...
CGF
2008
148views more  CGF 2008»
15 years 7 months ago
Automatic Registration for Articulated Shapes
We present an unsupervised algorithm for aligning a pair of shapes in the presence of significant articulated motion and missing data, while assuming no knowledge of a template, u...
Will Chang, Matthias Zwicker
IJSWIS
2007
87views more  IJSWIS 2007»
15 years 7 months ago
An Ontology-Based Data Mediation Framework for Semantic Environments
In a semantic environment data is described by ontologies and ontology mapping has become a crucial aspect in solving the heterogeneity problems of semantically described data. Th...
Adrian Mocan, Emilia Cimpian
TCBB
2010
114views more  TCBB 2010»
15 years 5 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...