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» Aligning alignments exactly
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NIPS
2003
15 years 9 months ago
Gene Expression Clustering with Functional Mixture Models
We propose a functional mixture model for simultaneous clustering and alignment of sets of curves measured on a discrete time grid. The model is specifically tailored to gene exp...
Darya Chudova, Christopher E. Hart, Eric Mjolsness...
PSB
2003
15 years 9 months ago
MAP: Searching Large Genome Databases
A number of biological applications require comparison of large genome strings. Current techniques suffer from both disk I/O and computational cost because of extensive memory req...
Tamer Kahveci, Ambuj K. Singh
UAI
2003
15 years 9 months ago
Probabilistic Models For Joint Clustering And Time-Warping Of Multidimensional Curves
In this paper we present a family of models and learning algorithms that can simultaneously align and cluster sets of multidimensional curves measured on a discrete time grid. Our...
Darya Chudova, Scott Gaffney, Padhraic Smyth
COLING
2000
15 years 9 months ago
Structural Feature Selection For English-Korean Statistical Machine Translation
When aligning texts in very different languages such as Korean and English, structural features beyond word or phrase give useful intbrmation. In this paper, we present a method f...
Seonho Kim, Juntae Yoon, Mansuk Song
ISMB
1998
15 years 9 months ago
Bayesian Protein Family Classifier
A Bayesian procedure for the simultaneous alignment and classification of sequences into subclasses is described. This Gibbs sampling algorithm iterates between an alignment step ...
Kunbin Qu, Lee Ann McCue, Charles E. Lawrence