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» An Auxiliary Variational Method
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NIPS
2000
15 years 8 months ago
Generalized Belief Propagation
In an important recent paper, Yedidia, Freeman, and Weiss [11] showed that there is a close connection between the belief propagation algorithm for probabilistic inference and the...
Jonathan S. Yedidia, William T. Freeman, Yair Weis...
BIOINFORMATICS
2008
97views more  BIOINFORMATICS 2008»
15 years 7 months ago
An integrated system for studying residue coevolution in proteins
Residue coevolution has recently emerged as an important concept, especially in the context of protein structures. While a multitude of different functions for quantifying it have...
Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald...
BMCBI
2010
125views more  BMCBI 2010»
15 years 7 months ago
Haplotype allelic classes for detecting ongoing positive selection
Background: Natural selection eliminates detrimental and favors advantageous phenotypes. This process leaves characteristic signatures in underlying genomic segments that can be r...
Julie Hussin, Philippe Nadeau, Jean-Françoi...
172
Voted
BMCBI
2010
136views more  BMCBI 2010»
15 years 7 months ago
Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
Background: Tag-based techniques, such as SAGE, are commonly used to sample the mRNA pool of an organism's transcriptome. Incomplete digestion during the tag formation proces...
Russell L. Zaretzki, Michael A. Gilchrist, William...
183
Voted
BMCBI
2010
100views more  BMCBI 2010»
15 years 7 months ago
Using genomic signatures for HIV-1 sub-typing
Background: Human Immunodeficiency Virus type 1 (HIV-1), the causative agent of Acquired Immune Deficiency Syndrome (AIDS), exhibits very high genetic diversity with different var...
Aridaman Pandit, Somdatta Sinha