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BMCBI
2006
116views more  BMCBI 2006»
15 years 7 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
FOCS
2005
IEEE
16 years 16 days ago
The Closest Substring problem with small distances
In the CLOSEST SUBSTRING problem k strings s1, ..., sk are given, and the task is to find a string s of length L such that each string si has a consecutive substring of length L ...
Dániel Marx
PAKDD
2004
ACM
94views Data Mining» more  PAKDD 2004»
16 years 8 days ago
Towards Optimizing Conjunctive Inductive Queries
Inductive queries are queries to an inductive database that generate a set of patterns in a data mining context. Inductive querying poses new challenges to database and data mining...
Johannes Fischer, Luc De Raedt
JMLR
2006
125views more  JMLR 2006»
15 years 6 months ago
Linear Programming Relaxations and Belief Propagation - An Empirical Study
The problem of finding the most probable (MAP) configuration in graphical models comes up in a wide range of applications. In a general graphical model this problem is NP hard, bu...
Chen Yanover, Talya Meltzer, Yair Weiss
IADIS
2008
15 years 8 months ago
Sisa: Seeded Iterative Signature Algorithm for Biclustering Gene Expression Data
One approach to reduce the complexity of the task in the analysis of large scale genome-wide expression is to group the genes showing similar expression patterns into what are cal...
Neelima Gupta, Seema Aggarwal