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BMCBI
2007
97views more  BMCBI 2007»
15 years 7 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
BMCBI
2006
97views more  BMCBI 2006»
15 years 7 months ago
REEF: searching REgionally Enriched Features in genomes
Background: In Eukaryotic genomes, different features including genes are not uniformly distributed. The integration of annotation information and genomic position of functional D...
Alessandro Coppe, Gian Antonio Danieli, Stefania B...
IM
2008
15 years 7 months ago
Directed Random Dot Product Graphs
In this paper we consider three models for random graphs that utilize the inner product as their fundamental object. We analyze the behavior of these models with respect to cluster...
Stephen J. Young, Edward R. Scheinerman
BMCBI
2005
120views more  BMCBI 2005»
15 years 7 months ago
SpectralNET - an application for spectral graph analysis and visualization
Background: Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks ...
Joshua J. Forman, Paul A. Clemons, Stuart L. Schre...
CORR
2004
Springer
144views Education» more  CORR 2004»
15 years 7 months ago
The Google Similarity Distance
Words and phrases acquire meaning from the way they are used in society, from their relative semantics to other words and phrases. For computers the equivalent of `society' is...
Rudi Cilibrasi, Paul M. B. Vitányi