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BMCBI
2008
107views more  BMCBI 2008»
15 years 7 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2006
129views more  BMCBI 2006»
15 years 7 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
ICANN
2009
Springer
15 years 4 months ago
Mining Rules for the Automatic Selection Process of Clustering Methods Applied to Cancer Gene Expression Data
Different algorithms have been proposed in the literature to cluster gene expression data, however there is no single algorithm that can be considered the best one independently on...
André C. A. Nascimento, Ricardo Bastos Cava...
RECOMB
2005
Springer
16 years 7 months ago
The Incompatible Desiderata of Gene Cluster Properties
Abstract. There is widespread interest in comparative genomics in determining if historically and/or functionally related genes are spatially clustered in the genome, and whether t...
Rose Hoberman, Dannie Durand
BIRTHDAY
2004
Springer
16 years 11 days ago
Two Models for Gene Assembly in Ciliates
Two models for gene assembly in ciliates have been proposed and investigated in the last few years. The DNA manipulations postulated in the two models are very different: one mode...
Tero Harju, Ion Petre, Grzegorz Rozenberg