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» Computation in Gene Networks
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BMCBI
2010
118views more  BMCBI 2010»
15 years 7 months ago
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Background: To understand the evolutionary role of Lateral Gene Transfer (LGT), accurate methods are needed to identify transferred genes and infer their timing of acquisition. Ph...
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent...
IPPS
2006
IEEE
16 years 1 months ago
Topology-aware task mapping for reducing communication contention on large parallel machines
Communication latencies constitute a significant factor in the performance of parallel applications. With techniques such as wormhole routing, the variation in no-load latencies ...
T. Agarwal, Amit Sharma, A. Laxmikant, Laxmikant V...
WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
16 years 11 days ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
NN
2006
Springer
104views Neural Networks» more  NN 2006»
15 years 7 months ago
Local multidimensional scaling
Several bioinformatics data sets are naturally represented as graphs, for instance gene regulation, metabolic pathways, and proteinprotein interactions. The graphs are often large ...
Jarkko Venna, Samuel Kaski
GCB
2009
Springer
105views Biometrics» more  GCB 2009»
16 years 1 months ago
Maximum Likelihood Estimation of Weight Matrices for Targeted Homology Search
: Genome annotation relies to a large extent on the recognition of homologs to already known genes. The starting point for such protocols is a collection of known sequences from on...
Peter Menzel, Jan Gorodkin, Peter F. Stadler