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» Computation in Gene Networks
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PPSN
2004
Springer
16 years 12 days ago
Searching Transcriptional Modules Using Evolutionary Algorithms
The mechanism of gene regulation has been studied intensely for decades. It is important to identify synergistic transcriptional motifs. Its search space is so large that an effici...
Je-Gun Joung, Sok June Oh, Byoung-Tak Zhang
RECOMB
2008
Springer
16 years 7 months ago
Reconstructing the Evolutionary History of Complex Human Gene Clusters
Abstract. Clusters of genes that evolved from single progenitors via repeated segmental duplications present significant challenges to the generation of a truly complete human geno...
Adam C. Siepel, Eric D. Green, Giltae Song, Tom&aa...
IJCNN
2008
IEEE
16 years 1 months ago
Comparative study on normalization procedures for cluster analysis of gene expression datasets
—Normalization before clustering is often needed for proximity indices, such as Euclidian distance, which are sensitive to differences in the magnitude or scales of the attribute...
Marcílio Carlos Pereira de Souto, Daniel S....
ISNN
2005
Springer
16 years 16 days ago
Non-parametric Statistical Tests for Informative Gene Selection
This paper presents two non-parametric statistical test methods, called Kolmogorov-Smirnov (KS) and U statistic test methods, respectively, for informative gene selection of a tumo...
Jinwen Ma, Fuhai Li, Jianfeng Liu
ICCS
2005
Springer
16 years 17 days ago
Super-Scalable Algorithms for Computing on 100, 000 Processors
In the next five years, the number of processors in high-end systems for scientific computing is expected to rise to tens and even hundreds of thousands. For example, the IBM Blu...
Christian Engelmann, Al Geist