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» Computation in Gene Networks
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2005
ACM
16 years 22 days ago
A Scalable Distributed Parallel Breadth-First Search Algorithm on BlueGene/L
Many emerging large-scale data science applications require searching large graphs distributed across multiple memories and processors. This paper presents a distributed breadthï¬...
Andy Yoo, Edmond Chow, Keith W. Henderson, Will Mc...
CIBCB
2006
IEEE
15 years 9 months ago
A New Hybrid Approach for Unsupervised Gene Selection
In recent years, unsupervised gene (feature) selection has become an integral part of microarray analysis because of the large number of genes and complexity in biological systems....
Young Bun Kim, Jean Gao
IPPS
2010
IEEE
15 years 4 months ago
Prototype for a large-scale static timing analyzer running on an IBM Blue Gene
This paper focuses on parallelization of the classic static timing analysis (STA) algorithm for verifying timing characteristics of digital integrated circuits. Given ever-increasi...
Akintayo Holder, Christopher D. Carothers, Kerim K...
BMCBI
2008
143views more  BMCBI 2008»
15 years 7 months ago
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Background: The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, ...
Shibu Yooseph, Weizhong Li, Granger G. Sutton
BIOINFORMATICS
2008
106views more  BIOINFORMATICS 2008»
15 years 7 months ago
Small RNA gene identification and mRNA target predictions in bacteria
Motivation: Bacterial small ribonucleic acids (sRNAs) that are not ribosomal and transfer or messenger RNAs were initially identified in the sixties whereas their molecular functi...
Christophe Pichon, Brice Felden