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RECOMB
2012
Springer
13 years 9 months ago
Recovering the Tree-Like Trend of Evolution Despite Extensive Lateral Genetic Transfer: A Probabilistic Analysis
Abstract. Lateral gene transfer (LGT) is a common mechanism of nonvertical evolution where genetic material is transferred between two more or less distantly related organisms. It ...
Sebastien Roch, Sagi Snir
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
16 years 24 days ago
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems
The genome projects have provided comprehensive information about the basic building blocks of life. The next challenge is to understand how biological functions emerge from compl...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
CORR
2008
Springer
115views Education» more  CORR 2008»
15 years 7 months ago
Positive circuits and maximal number of fixed points in discrete dynamical systems
We consider a product X of n finite intervals of integers, a map F from X to itself, the asynchronous state transition graph (F) on X that Thomas proposed as a model for the dynam...
Adrien Richard
BMCBI
2010
122views more  BMCBI 2010»
15 years 2 months ago
Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PF
Background: A new paradigm of biological investigation takes advantage of technologies that produce large high throughput datasets, including genome sequences, interactions of pro...
Troy Hawkins, Meghana Chitale, Daisuke Kihara
BMCBI
2011
14 years 10 months ago
MINE: Module Identification in NEtworks
Background: Graphical models of network associations are useful for both visualizing and integrating multiple types of association data. Identifying modules, or groups of function...
Kahn Rhrissorrakrai, Kristin C. Gunsalus