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» Computation in Gene Networks
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RECOMB
2008
Springer
16 years 8 months ago
Ancestral Reconstruction by Asymmetric Wagner Parsimony over Continuous Characters and Squared Parsimony over Distributions
Abstract. Contemporary inferences about evolution occasionally involve analyzing infinitely large feature spaces, requiring specific algorithmic techniques. We consider parsimony a...
Miklós Csürös
RECOMB
2005
Springer
16 years 1 months ago
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
Phenotypic differences between closely-related species may arise from differential expression regimes, rather than different gene complements. Knowledge of cellular protein levels ...
Orna Man, Joel L. Sussman, Yitzhak Pilpel
PSB
2004
15 years 9 months ago
An Evidence Ontology for Use in Pathway/Genome Databases
An important emerging need in Model Organism Databases (MODs) and other bioinformatics databases (DBs) is that of capturing the scientific evidence that supports the information wi...
Peter D. Karp, Suzanne M. Paley, Cynthia J. Kriege...
BMCBI
2006
124views more  BMCBI 2006»
15 years 7 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
IPSN
2004
Springer
16 years 29 days ago
Locally constructed algorithms for distributed computations in ad-hoc networks
In this paper we develop algorithms for distributed computation of a broad range of estimation and detection tasks over networks with arbitrary but fixed connectivity. The distri...
Dzulkifli S. Scherber, Haralabos C. Papadopoulos