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BMCBI
2008
116views more  BMCBI 2008»
15 years 6 months ago
GBParsy: A GenBank flatfile parser library with high speed
Background: GenBank flatfile (GBF) format is one of the most popular sequence file formats because of its detailed sequence features and ease of readability. To use the data in th...
Tae-Ho Lee, Yeon-Ki Kim, Baek Hie Nahm
ERCIMDL
1999
Springer
117views Education» more  ERCIMDL 1999»
15 years 11 months ago
Predicting Indexer Performance in a Distributed Digital Library
Resource discovery in a distributed digital library poses many challenges, one of which is how to choose search engines for query distribution, given a query and a set of search e...
Naomi Dushay, James C. French, Carl Lagoze
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
16 years 2 days ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
PPAM
2005
Springer
16 years 2 days ago
A Web Computing Environment for Parallel Algorithms in Java
We present a web computing library (PUBWCL) in Java that allows to execute tightly coupled, massively parallel algorithms in the bulk-synchronous (BSP) style on PCs distributed ove...
Olaf Bonorden, Joachim Gehweiler, Friedhelm Meyer ...
PARA
2000
Springer
15 years 10 months ago
Experiments in Separating Computational Algorithm from Program Distribution and Communication
Our proposal has the following key features: 1) The separation of a distributed program into a pure algorithm (PurAl) and a distribution/communication declaration (DUAL). This yie...
Raphael B. Yehezkael, Yair Wiseman, H. G. Mendelba...