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» Computer algebra in systems biology
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214
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RECOMB
2005
Springer
16 years 7 months ago
The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways
Abstract. The Pathalyzer is a program for analyzing large-scale signal transduction networks. Reactions and their substrates and products are represented as transitions and places ...
David L. Dill, Merrill Knapp, Pamela Gage, Carolyn...
ISMB
1996
15 years 8 months ago
Finding Genes in DNA Using Decision Trees and Dynamic Programming
This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
Steven Salzberg, Xin Chen, John Henderson, Kenneth...
231
Voted
PPOPP
2006
ACM
16 years 1 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
205
Voted
ISMB
1993
15 years 8 months ago
Minimizing Complexity in Cellular Automata Models of Self-Replication
Understanding self-replication from an information processing perspective is important because, amongother things, it can shed light on molecular mechanismsof biological reproduct...
James A. Reggia, Hui-Hsien Chou, Steven L. Armentr...
191
Voted
MKM
2004
Springer
16 years 11 days ago
Flexible Encoding of Mathematics on the Computer
This paper reports on refinements and extensions to the MathLang framework that add substantial support for natural language text. We show how the extended framework supports mult...
Fairouz Kamareddine, Manuel Maarek, J. B. Wells