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RECOMB
2005
Springer
16 years 8 months ago
Modeling the Combinatorial Functions of Multiple Transcription Factors
A considerable fraction of yeast gene promoters are bound by multiple transcription factors. To study the combinatorial interactions of multiple transcription factors is thus impor...
Chen-Hsiang Yeang, Tommi Jaakkola
RECOMB
2002
Springer
16 years 8 months ago
A dimensionality reduction approach to modeling protein flexibility
Proteins are involved either directly or indirectly in all biological processes in living organisms. It is now widely accepted that conformational changes of proteins can critical...
Miguel L. Teodoro, George N. Phillips, Lydia E. Ka...
RECOMB
2001
Springer
16 years 8 months ago
Context-specific Bayesian clustering for gene expression data
The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
Yoseph Barash, Nir Friedman
CADE
2008
Springer
16 years 8 months ago
Automata-Based Axiom Pinpointing
Axiom pinpointing has been introduced in description logics (DL) to help the user understand the reasons why consequences hold by computing minimal subsets of the knowledge base th...
Franz Baader, Rafael Peñaloza
ICCAD
2005
IEEE
81views Hardware» more  ICCAD 2005»
16 years 4 months ago
Kauffman networks: analysis and applications
Abstract— A Kauffman network is an abstract model of gene regulatory networks. Each gene is represented by a vertex. An edge from one vertex to another implies that the former ge...
Elena Dubrova, Maxim Teslenko, Andrés Marti...