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BMVC
1997
15 years 9 months ago
Multi-Level Probabilistic Relaxation
We present a multi-level probabilistic relaxation scheme appropriate for image segmentation on the basis of features computed at various resolution levels. At each level, we incor...
Maria Petrou, Majid Mirmehdi, M. Coors
BMCBI
2007
233views more  BMCBI 2007»
15 years 7 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong
BMCBI
2010
167views more  BMCBI 2010»
15 years 7 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
DAC
2003
ACM
16 years 8 months ago
An algebraic multigrid solver for analytical placement with layout based clustering
An efficient matrix solver is critical to the analytical placement. As the size of the matrix becomes huge, the multilevel methods turn out to be more efficient and more scalable....
Hongyu Chen, Chung-Kuan Cheng, Nan-Chi Chou, Andre...
ICNP
2009
IEEE
16 years 2 months ago
Multipath load-adaptive routing: putting the emphasis on robustness and simplicity
— We propose a routing and load-balancing approach with the primary goal of being robust to sudden topological changes and significant traffic matrix variations. The proposed m...
Amund Kvalbein, Constantine Dovrolis, Chidambaram ...