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» Computing with Evolving Proteins
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ICPP
2007
IEEE
16 years 1 months ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
IPPS
2007
IEEE
16 years 1 months ago
Biomolecular Path Sampling Enabled by Processing in Network Storage
Computationally complex and data intensive atomic scale biomolecular simulation is enabled via Processing in Network Storage (PINS): a novel distributed system framework to overco...
Paul Brenner, Justin M. Wozniak, Douglas Thain, Aa...
LSGRID
2004
Springer
16 years 23 days ago
Mega Process Genetic Algorithm Using Grid MP
In this study, a new Genetic Algorithm (GA) using the Tabu · Local Search mechanism is proposed. The GA described in this paper is considered a Mega Process GA, which has an effe...
Yoshiko Hanada, Tomoyuki Hiroyasu, Mitsunori Miki,...
GECCO
2004
Springer
16 years 23 days ago
Multi-agent Cooperation Using Genetic Network Programming with Automatically Defined Groups
In this paper, we propose a genetic network programming (GNP) architecture using a coevolution model called automatically defined groups (ADG). The GNP evolves networks for describ...
Tadahiko Murata, Takashi Nakamura
CVPR
2006
IEEE
16 years 9 months ago
Structure and View Estimation for Tomographic Reconstruction: A Bayesian Approach
This paper addresses the problem of reconstructing the density of a scene from multiple projection images produced by modalities such as x-ray, electron microscopy, etc. where an ...
Satya P. Mallick, Sameer Agarwal, David J. Kriegma...