309 search results - page 8 / 62 » Contextual alignment of biological sequences |
178
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CIBCB
2007
IEEE
16 years 27 days ago
2007
IEEE
Abstract— Multiple sequence alignment is an important problem in computational biology. A-star is an algorithm that can be used to find exact alignments. We present a simple mod...
200
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BMCBI
2005
15 years 6 months ago
2005
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
187
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RECOMB
2006
Springer
16 years 6 months ago
2006
Springer
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
153
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AINA
2008
IEEE
16 years 1 months ago
2008
IEEE
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
161
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RECOMB
2004
Springer
16 years 6 months ago
2004
Springer
We have developed a multiple genome alignment algorithm by using a sequence clustering algorithm to combine local pairwise genome sequence matches produced by pairwise genome align...