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» Current approaches to gene regulatory network modelling
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BMCBI
2007
171views more  BMCBI 2007»
15 years 6 months ago
Classification of microarray data using gene networks
Background: Microarrays have become extremely useful for analysing genetic phenomena, but establishing a relation between microarray analysis results (typically a list of genes) a...
Franck Rapaport, Andrei Zinovyev, Marie Dutreix, E...
NAR
2002
141views more  NAR 2002»
15 years 6 months ago
Co-expression pattern from DNA microarray experiments as a tool for operon prediction
The prediction of operons, the smallest unit of transcription in prokaryotes, is the first step towards reconstruction of a regulatory network at the whole genome level. Sequence ...
Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. ...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
15 years 6 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
BMCBI
2011
14 years 10 months ago
A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression
Background: The analysis of gene expression from time series underpins many biological studies. Two basic forms of analysis recur for data of this type: removing inactive (quiet) ...
Alfredo A. Kalaitzis, Neil D. Lawrence
ICLP
2010
Springer
15 years 10 months ago
Efficient Solving of Time-dependent Answer Set Programs
Answer set programs with time predicates are useful to model systems whose properties depend on time, like for example gene regulatory networks. A state of such a system at time po...
Timur Fayruzov, Jeroen Janssen, Dirk Vermeir, Chri...