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SPIRE
2009
Springer
15 years 11 months ago
Faster Algorithms for Sampling and Counting Biological Sequences
Abstract. A set of sequences S is pairwise bounded if the Hamming distance between any pair of sequences in S is at most 2d. The Consensus Sequence problem aims to discern between ...
Christina Boucher
IWMM
2000
Springer
122views Hardware» more  IWMM 2000»
15 years 10 months ago
Concurrent Garbage Collection Using Program Slices on Multithreaded Processors
We investigate reference counting in the context of a multithreaded architecture by exploiting two observations: (1) reference-counting can be performed by a transformed program s...
Manoj Plakal, Charles N. Fischer
CC
2007
Springer
16 years 18 days ago
Preprocessing Strategy for Effective Modulo Scheduling on Multi-issue Digital Signal Processors
To achieve high resource utilization for multi-issue Digital Signal Processors (DSPs), production compilers commonly include variants of the iterative modulo scheduling algorithm. ...
Doosan Cho, Ravi Ayyagari, Gang-Ryung Uh, Yunheung...
ECAI
2006
Springer
15 years 8 months ago
Count-As Conditionals, Classification and Context
Abstract. Searle represents constitutive norms as count-as conditionals, written as `X counts as Y in context C'. Grossi et al. study a class of these conditionals as `in cont...
Guido Boella, Leendert W. N. van der Torre
BMCBI
2007
125views more  BMCBI 2007»
15 years 6 months ago
Statistical tests to compare motif count exceptionalities
Background: Finding over- or under-represented motifs in biological sequences is now a common task in genomics. Thanks to p-value calculation for motif counts, exceptional motifs ...
Stéphane Robin, Sophie Schbath, Vincent Van...