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WEBI
2009
Springer
16 years 1 months ago
Fast Matching for All Pairs Similarity Search
All pairs similarity search is the problem of finding all pairs of records that have a similarity score above the specified threshold. Many real-world systems like search engine...
Amit C. Awekar, Nagiza F. Samatova
BMCBI
2006
122views more  BMCBI 2006»
15 years 6 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
EVOW
2010
Springer
16 years 1 months ago
A Local Search Appproach for Transmembrane Segment and Signal Peptide Discrimination
Discriminating between secreted and membrane proteins is a challenging task. This is particularly true for discriminating between transmembrane segments and signal peptides because...
Sami Laroum, Dominique Tessier, Béatrice Du...
BMCBI
2006
145views more  BMCBI 2006»
15 years 6 months ago
GEM System: automatic prototyping of cell-wide metabolic pathway models from genomes
Background: Successful realization of a "systems biology" approach to analyzing cells is a grand challenge for our understanding of life. However, current modeling appro...
Kazuharu Arakawa, Yohei Yamada, Kosaku Shinoda, Yo...
ICDE
2003
IEEE
139views Database» more  ICDE 2003»
16 years 8 months ago
Super-Fast XML Wrapper Generation in DB2: A Demonstration
The XML Wrapper is a new feature of the federated database capabilities of DB2/UDB v8. It enables users and applications to issue SQL queries against XML data from a variety of so...
Vanja Josifovski, Sabine Massmann, Felix Naumann