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BMCBI
2010
108views more  BMCBI 2010»
15 years 2 months ago
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...
PLDI
2012
ACM
13 years 9 months ago
Diderot: a parallel DSL for image analysis and visualization
Research scientists and medical professionals use imaging technology, such as computed tomography (CT) and magnetic resonance imaging (MRI) to measure a wide variety of biological...
Charisee Chiw, Gordon Kindlmann, John Reppy, Lamon...
BMCBI
2007
130views more  BMCBI 2007»
15 years 7 months ago
Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data
Background: Many researchers are concerned with the comparability and reliability of microarray gene expression data. Recent completion of the MicroArray Quality Control (MAQC) pr...
James J. Chen, Huey-miin Hsueh, Robert R. Delongch...
BMCBI
2008
123views more  BMCBI 2008»
15 years 7 months ago
Statistical methodology for the analysis of dye-switch microarray experiments
Background: In individually dye-balanced microarray designs, each biological sample is hybridized on two different slides, once with Cy3 and once with Cy5. While this strategy ens...
Tristan Mary-Huard, Julie Aubert, Nadera Mansouri-...
BMCBI
2008
135views more  BMCBI 2008»
15 years 7 months ago
Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
Background: Normalization is essential in dual-labelled microarray data analysis to remove nonbiological variations and systematic biases. Many normalization methods have been use...
Huiling Xiong, Dapeng Zhang, Christopher J. Martyn...