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» Evaluation of clustering algorithms for gene expression data
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SCHOLARPEDIA
2011
14 years 9 months ago
N-body simulations
Abstract. Scientists’ ability to generate and collect massive-scale datasets is increasing. As a result, constraints in data analysis capability rather than limitations in the av...
BMCBI
2010
144views more  BMCBI 2010»
15 years 7 months ago
Finding sRNA generative locales from high-throughput sequencing data with NiBLS
Background: Next-generation sequencing technologies allow researchers to obtain millions of sequence reads in a single experiment. One important use of the technology is the seque...
Daniel MacLean, Vincent Moulton, David J. Studholm...
173
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KDD
2006
ACM
142views Data Mining» more  KDD 2006»
16 years 7 months ago
Automatic mining of fruit fly embryo images
We present FEMine, an automatic system for image-based gene expression analysis. We perform experiments on the largest publicly available collection of Drosophila ISH (in situ hyb...
Jia-Yu Pan, André G. R. Balan, Eric P. Xing...
BMCBI
2007
111views more  BMCBI 2007»
15 years 7 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
BMCBI
2008
106views more  BMCBI 2008»
15 years 7 months ago
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi,
Background: Over 60% of protein-coding genes in vertebrates express mRNAs that undergo alternative splicing. The resulting collection of transcript isoforms poses significant chal...
Michael C. Ryan, Barry Zeeberg, Natasha J. Caplen,...