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ACRI
2008
Springer
16 years 1 months ago
On the Representation of Gliders in Rule 54 by De Bruijn and Cycle Diagrams
Abstract. Rule 54, in Wolfram’s notation, is one of elementary yet complexly behaving one-dimensional cellular automata. The automaton supports gliders, glider guns and other non...
Genaro Juárez Martínez, Andrew Adama...
ISMB
1997
15 years 8 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
ALMOB
2007
155views more  ALMOB 2007»
15 years 7 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
BMCBI
2004
265views more  BMCBI 2004»
15 years 6 months ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...
CORR
2010
Springer
103views Education» more  CORR 2010»
15 years 5 months ago
BioBlender: a Software for Intuitive Representation of Surface Properties of Biomolecules
In this and the associated article BioBlender: A Software for Intuitive Representation of Surface Properties of Biomolecules [1], we present BioBlender as a complete instrument fo...
Raluca Mihaela Andrei, Marco Callieri, Maria Franc...