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SAC
2009
ACM
16 years 1 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
INTERACTION
2009
ACM
16 years 1 months ago
DTD2OWL: automatic transforming XML documents into OWL ontology
DTD and its instance have been considered the standard for data representation and information exchange format on the current web. However, when coming to the next generation of w...
Pham Thi Thu Thuy, Young-Koo Lee, Sungyoung Lee
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
16 years 1 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
NDSS
2007
IEEE
16 years 1 months ago
RICH: Automatically Protecting Against Integer-Based Vulnerabilities
We present the design and implementation of RICH (Run-time Integer CHecking), a tool for efficiently detecting integer-based attacks against C programs at run time. C integer bug...
David Brumley, Dawn Xiaodong Song, Tzi-cker Chiueh...
ESOP
2007
Springer
16 years 1 months ago
On the Implementation of Construction Functions for Non-free Concrete Data Types
Abstract. Many algorithms use concrete data types with some additional invariants. The set of values satisfying the invariants is often a set of representatives for the equivalence...
Frédéric Blanqui, Thérè...