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JCB
2008
102views more  JCB 2008»
15 years 7 months ago
DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications
Accurately reconstructing the large-scale gene order in an ancestral genome is a critical step to better understand genome evolution. In this paper, we propose a heuristic algorit...
Jian Ma, Aakrosh Ratan, Brian J. Raney, Bernard B....
JCB
2008
75views more  JCB 2008»
15 years 7 months ago
New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design
We define new measures of sequence similarity for oligonucleotide probe design. These new measures incorporate the nearest neighbor k-stem motifs in their definition, but can be e...
Anthony J. Macula, Alexander Schliep, Morgan A. Bi...
CSDA
2007
148views more  CSDA 2007»
15 years 7 months ago
Classifying densities using functional regression trees: Applications in oceanology
The problem of building a regression tree is considered when the response variable is a probability density function. Splitting criteria which are well adapted to measure the diss...
David Nerini, Badih Ghattas
CSDA
2007
128views more  CSDA 2007»
15 years 7 months ago
Regularized linear and kernel redundancy analysis
Redundancy analysis (RA) is a versatile technique used to predict multivariate criterion variables from multivariate predictor variables. The reduced-rank feature of RA captures r...
Yoshio Takane, Heungsun Hwang
MONET
2008
153views more  MONET 2008»
15 years 7 months ago
Comparison of MANET Routing Protocols Using a Scaled Indoor Wireless Grid
Predicting the performance of ad-hoc networking protocols has typically been performed by making use of software based simulation tools. Experimental study and validation of such p...
David Johnson, Albert Lysko