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2008
Springer
15 years 9 months ago
Protein Interaction Inference Using Particle Swarm Optimization Algorithm
Many processes in the cell involve interaction among the proteins and determination of the networks of such interactions is of immense importance towards the complete understanding...
Mudassar Iqbal, Alex Alves Freitas, Colin G. Johns...
UAI
2008
15 years 8 months ago
Continuous Time Dynamic Topic Models
In this paper, we develop the continuous time dynamic topic model (cDTM). The cDTM is a dynamic topic model that uses Brownian motion to model the latent topics through a sequenti...
Chong Wang, David M. Blei, David Heckerman
EMNLP
2008
15 years 8 months ago
Stacking Dependency Parsers
We explore a stacked framework for learning to predict dependency structures for natural language sentences. A typical approach in graph-based dependency parsing has been to assum...
André F. T. Martins, Dipanjan Das, Noah A. ...
BMCBI
2008
86views more  BMCBI 2008»
15 years 7 months ago
Piecewise multivariate modelling of sequential metabolic profiling data
Background: Modelling the time-related behaviour of biological systems is essential for understanding their dynamic responses to perturbations. In metabolic profiling studies, the...
Mattias Rantalainen, Olivier Cloarec, Timothy M. D...
BMCBI
2008
121views more  BMCBI 2008»
15 years 7 months ago
ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...