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150
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CPM
2004
Springer
86views Combinatorics» more  CPM 2004»
16 years 28 days ago
Optimizing Multiple Spaced Seeds for Homology Search
Optimized spaced seeds improve sensitivity and specificity in local homology search. Several authors have shown that multiple seeds can have better sensitivity and specificity t...
Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
183
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WABI
2004
Springer
16 years 26 days ago
Local Search Heuristic for Rigid Protein Docking
Abstract. We give an algorithm that locally improves the fit between two proteins modeled as space-filling diagrams. The algorithm defines the fit in purely geometric terms and...
Vicky Choi, Pankaj K. Agarwal, Herbert Edelsbrunne...
175
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DATE
2000
IEEE
75views Hardware» more  DATE 2000»
15 years 12 months ago
Layout Compaction for Yield Optimization via Critical Area Minimization
This paper presents a new compaction algorithm to improve the yield of IC layout. The yield is improved by reducing the area where the faults are more likely to happen known as cr...
Youcef Bourai, C.-J. Richard Shi
226
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AINA
2007
IEEE
15 years 11 months ago
Improving distributed join efficiency with extended bloom filter operations
Bloom filter based algorithms have proven successful as very efficient technique to reduce communication costs of database joins in a distributed setting. However, the full potent...
Loizos Michael, Wolfgang Nejdl, Odysseas Papapetro...
CONCUR
2006
Springer
15 years 11 months ago
Strategy Improvement for Stochastic Rabin and Streett Games
A stochastic graph game is played by two players on a game graph with probabilistic transitions. We consider stochastic graph games with -regular winning conditions specified as Ra...
Krishnendu Chatterjee, Thomas A. Henzinger