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» New architectures for a new biology
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COMAD
2009
15 years 5 months ago
Similarity Search in Moving Object Trajectories
The continuous and rapid advent in mobile and communications technology opens the way for new research areas and new applications. Moving Object Databases(MODs) are among the emer...
Omnia Ossama Hoda, M. O. Mokhtar
212
Voted
SIAMAM
2011
15 years 2 months ago
Persistence Results for Chemical Reaction Networks with Time-Dependent Kinetics and No Global Conservation Laws
New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement existing ones. The new results allow the consideration of reaction ra...
David Angeli, Patrick De Leenheer, Eduardo D. Sont...
TCBB
2011
15 years 2 months ago
Graph Comparison by Log-Odds Score Matrices with Application to Protein Topology Analysis
A TOPS diagram is a simplified description of the topology of a protein using a graph where nodes are α-helices and β-strands, and edges correspond to chirality relations and p...
J. Rocha
205
Voted
IPPS
2002
IEEE
16 years 11 days ago
Massively Parallel Solutions for Molecular Sequence Analysis
In this paper we present new approaches to high performance protein database scanning on two novel massively parallel architectures to gain supercomputer power at low cost. The ...
Bertil Schmidt, Heiko Schröder, Manfred Schim...
BMCBI
2008
200views more  BMCBI 2008»
15 years 7 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia