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IDA
2003
Springer
16 years 28 days ago
Fuzzy Clustering of Short Time-Series and Unevenly Distributed Sampling Points
This paper proposes a new clustering algorithm in the fuzzy-c-means family, which is designed to cluster time series and is particularly suited for short time series and those wit...
Carla S. Möller-Levet, Frank Klawonn, Kwang-H...
RECOMB
1998
Springer
15 years 12 months ago
Alignments without low-scoring regions
Given a strong match between regions of two sequences, how far can the match be meaningfully extended if gaps are allowed in the resulting alignment? The aim is to avoid searching...
Zheng Zhang 0004, Piotr Berman, Webb Miller
ANTSW
2006
Springer
15 years 11 months ago
Extending the Particle Swarm Algorithm to Model Animal Foraging Behaviour
The particle swarm algorithm contains elements which map fairly strongly to the foraging problem in behavioural ecology. In this paper, we show how some simple adaptions to the sta...
Cecilia Di Chio, Riccardo Poli, Paolo Di Chio
CIBCB
2007
IEEE
15 years 9 months ago
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms
—In metabolic engineering it is difficult to identify which set of genetic manipulations will result in a microbial strain that achieves a desired production goal, due to the co...
Miguel Rocha, José P. Pinto, Isabel Rocha, ...
210
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ISMB
2003
15 years 9 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh