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208
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WABI
2007
Springer
110views Bioinformatics» more  WABI 2007»
16 years 1 months ago
Haplotype Inference Via Hierarchical Genotype Parsing
The within-species genetic variation due to recombinations leads to a mosaic-like structure of DNA. This structure can be modeled, e.g. by parsing sample sequences of current DNA w...
Pasi Rastas, Esko Ukkonen
WEA
2007
Springer
117views Algorithms» more  WEA 2007»
16 years 1 months ago
Better Landmarks Within Reach
We study the real algorithm for the point-to-point shortest path problem. It combines A∗ search search, landmark-based lower bounds, and reach-based pruning. We suggest several ...
Andrew V. Goldberg, Haim Kaplan, Renato Fonseca F....
243
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BIBE
2006
IEEE
112views Bioinformatics» more  BIBE 2006»
16 years 1 months ago
Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration
The analysis of alignments of functionally equivalent proteins can reveal regularities such as correlated positions or residue patterns which are important to ensure a specific f...
Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus...
196
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CCECE
2006
IEEE
16 years 1 months ago
Regularized Fractal Image Decoding
The goal of this paper is to present a new recipe for the fractal image decoding process. In this paper, we explain how fractal-based methods can be internally combined with regul...
Mehran Ebrahimi, Edward R. Vrscay
CCECE
2006
IEEE
16 years 1 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...