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» On the Approximability of Comparing Genomes with Duplicates
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BMCBI
2005
302views more  BMCBI 2005»
15 years 6 months ago
CGHPRO - A comprehensive data analysis tool for array CGH
Background: Array CGH (Comparative Genomic Hybridisation) is a molecular cytogenetic technique for the genome wide detection of chromosomal imbalances. It is based on the cohybrid...
Wei Chen, Fikret Erdogan, H.-Hilger Ropers, Steffe...
RECOMB
2006
Springer
16 years 7 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
TCBB
2010
91views more  TCBB 2010»
15 years 1 months ago
SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition
This paper integrates the signal, context and structure features for genome-wide promoter recognition, which is critical in many DNA sequence analysis tasks. First, CpG islands ar...
Jia Zeng, Xiaoyu Zhao, Xiao-Qin Cao, Hong Yan
IPPS
2010
IEEE
15 years 4 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...
CIVR
2007
Springer
273views Image Analysis» more  CIVR 2007»
16 years 24 days ago
Scalable near identical image and shot detection
This paper proposes and compares two novel schemes for near duplicate image and video-shot detection. The first approach is based on global hierarchical colour histograms, using ...
Ondrej Chum, James Philbin, Michael Isard, Andrew ...