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BMCBI
2010
142views more  BMCBI 2010»
15 years 7 months ago
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
Background: Likelihood-based phylogenetic inference is generally considered to be the most reliable classification method for unknown sequences. However, traditional likelihood-ba...
Frederick A. Matsen III, Robin B. Kodner, E. Virgi...
PR
2008
206views more  PR 2008»
15 years 7 months ago
A study of graph spectra for comparing graphs and trees
The spectrum of a graph has been widely used in graph theory to characterise the properties of a graph and extract information from its structure. It has also been employed as a g...
Richard C. Wilson, Ping Zhu
BMCBI
2005
100views more  BMCBI 2005»
15 years 7 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
CPC
1999
105views more  CPC 1999»
15 years 6 months ago
Total Path Length For Random Recursive Trees
Total path length, or search cost, for a rooted tree is defined as the sum of all root-to-node distances. Let Tn be the total path length for a random recursive tree of order n. M...
Robert P. Dobrow, James Allen Fill
WEA
2007
Springer
114views Algorithms» more  WEA 2007»
16 years 1 months ago
Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data
Abstract. A major task in evolutionary biology is to determine the ancestral relationships among the known species, a process generally referred as phylogenetic reconstruction. In ...
Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang