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197
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IPPS
2005
IEEE
16 years 19 days ago
BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools
A large number of bioinformatics analysis tools available today are processor intensive. Keeping in mind that the amount of biological data to be analyzed is growing steadily, and...
Thomas S. Brettin, Avinash Kewalramani
170
Voted
HPCC
2005
Springer
16 years 17 days ago
A Coarse Grained Parallel Algorithm for Closest Larger Ancestors in Trees with Applications to Single Link Clustering
Hierarchical clustering methods are important in many data mining and pattern recognition tasks. In this paper we present an efficient coarse grained parallel algorithm for Single...
Albert Chan, Chunmei Gao, Andrew Rau-Chaplin
188
Voted
ICA3PP
2005
Springer
16 years 17 days ago
GridFTP and Parallel TCP Support in NaradaBrokering
Many of the key features of file transfer mechanisms like reliable file transferring and parallel transferring are developed as part of the service. It makes very hard to re-use th...
Sang Boem Lim, Geoffrey Fox, Ali Kaplan, Shrideep ...
177
Voted
EUROPAR
2004
Springer
16 years 13 days ago
Task-Queue Based Hybrid Parallelism: A Case Study
Abstract. In this paper we report on our experiences with hybrid parallelism in PARDISO, a high-performance sparse linear solver. We start with the OpenMP-parallel numerical factor...
Karl Fürlinger, Olaf Schenk, Michael Hagemann
195
Voted
EUROPAR
2004
Springer
16 years 13 days ago
A Parallel PSPG Finite Element Method for Direct Simulation of Incompressible Flow
Abstract. We describe a consistent splitting approach to the pressurestabilized Petrov-Galerkin finite element method for incompressible flow. The splitting leads to (almost) exp...
Jörg Stiller, Karel Frana, Roger Grundmann, U...