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BMCBI
2010
189views more  BMCBI 2010»
15 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
CCGRID
2010
IEEE
15 years 4 months ago
Low-Cost Tuning of Two-Step Algorithms for Scheduling Mixed-Parallel Applications onto Homogeneous Clusters
Due to the strong increase of processing units available to the end user, expressing parallelism of an algorithm is a major challenge for many researchers. Parallel applications ar...
Sascha Hunold
VIS
2005
IEEE
297views Visualization» more  VIS 2005»
16 years 8 months ago
OpenGL Multipipe SDK: A Toolkit for Scalable Parallel Rendering
We describe OpenGL Multipipe SDK (MPK), a toolkit for scalable parallel rendering based on OpenGL. MPK provides a uniform application programming interface (API) to manage scalabl...
Praveen Bhaniramka, Philippe C. D. Robert, Stefan ...
HPDC
2007
IEEE
16 years 1 months ago
A fast topology inference: a building block for network-aware parallel processing
Adapting to the network is the key to achieving high performance for communication-intensive applications, including scientific computing, data intensive computing, and multicast...
Tatsuya Shirai, Hideo Saito, Kenjiro Taura
SIGMETRICS
2010
ACM
187views Hardware» more  SIGMETRICS 2010»
16 years 6 days ago
Can multipath mitigate power law delays?: effects of parallelism on tail performance
—Parallelism has often been used to improve the reliability and efficiency of a variety of different engineering systems. In this paper, we quantify the efficiency of paralleli...
Jian Tan, Wei Wei, Bo Jiang, Ness Shroff, Donald F...