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» Phylogenetic trees in ACL2

164

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JAR
2007

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Inferring Phylogenetic Trees Using Answer Set Programming

15 years 6 months ago

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We describe the reconstruction of a phylogeny for a set of taxa, with a character-based cladistics approach, in a declarative knowledge representation formalism, and show how to u...

Daniel R. Brooks, Esra Erdem, Selim T. Erdogan, Ja...

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104

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BIOINFORMATICS
2004

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LVB: parsimony and simulated annealing in the search for phylogenetic trees

15 years 6 months ago

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Daniel Barker

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BIOINFORMATICS
2004

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Visualizations for taxonomic and phylogenetic trees

15 years 6 months ago

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Cynthia Sims Parr, Bongshin Lee, Dana Campbell, Be...

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119

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JCO
2010

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Linear time construction of 5-phylogenetic roots for tree chordal graphs

15 years 5 months ago

Download webdocs.cs.ualberta.ca

William S. Kennedy, Hui Kong, Guohui Lin, Guiying ...

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180

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SAC
2006
ACM

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Protein classification using transductive learning on phylogenetic profiles

16 years 19 days ago

Download www.eecis.udel.edu

Phylogenetic profiles of proteins − strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes − have recently been used to iden...

Roger A. Craig, Li Liao

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