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BMCBI
2008
128views more  BMCBI 2008»
15 years 6 months ago
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor bindin
Background: Biologically active sequence motifs often have positional preferences with respect to a genomic landmark. For example, many known transcription factor binding sites (T...
Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mari...
BMCBI
2008
173views more  BMCBI 2008»
15 years 6 months ago
Improved machine learning method for analysis of gas phase chemistry of peptides
Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
CIKM
2010
Springer
15 years 5 months ago
Learning to rank relevant and novel documents through user feedback
We consider the problem of learning to rank relevant and novel documents so as to directly maximize a performance metric called Expected Global Utility (EGU), which has several de...
Abhimanyu Lad, Yiming Yang
ICPPW
2009
IEEE
15 years 4 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
TKDE
2011
330views more  TKDE 2011»
15 years 1 months ago
Effective Navigation of Query Results Based on Concept Hierarchies
— Search queries on biomedical databases, such as PubMed, often return a large number of results, only a small subset of which is relevant to the user. Ranking and categorization...
Abhijith Kashyap, Vagelis Hristidis, Michalis Petr...