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BMCBI
2011
14 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
FOSSACS
2011
Springer
14 years 11 months ago
Minimizing Deterministic Lattice Automata
Traditional automata accept or reject their input, and are therefore Boolean. In contrast, weighted automata map each word to a value from a semiring over a large domain. The speci...
Shulamit Halamish, Orna Kupferman
NAR
2011
190views Computer Vision» more  NAR 2011»
14 years 10 months ago
New tools and methods for direct programmatic access to the dbSNP relational database
Genome-wide association studies often incorporate information from public biological databases in order to provide a biological reference for interpreting the results. The dbSNP d...
Scott F. Saccone, Jiaxi Quan, Gaurang Mehta, Rapha...
PLDI
2011
ACM
14 years 10 months ago
Language-independent sandboxing of just-in-time compilation and self-modifying code
When dealing with dynamic, untrusted content, such as on the Web, software behavior must be sandboxed, typically through use of a language like JavaScript. However, even for such ...
Jason Ansel, Petr Marchenko, Úlfar Erlingss...
COMPSAC
2011
IEEE
14 years 7 months ago
Palimpsests of Time and Place
— This paper discusses ongoing research into the development of an original composition portfolio themed on the concept of palimpsests of time and place. The research involves th...
Jerry Fishenden, Andrew Hugill
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