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BMCBI
2008
123views more  BMCBI 2008»
15 years 7 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
BMCBI
2008
135views more  BMCBI 2008»
15 years 7 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
PAMI
2011
15 years 2 months ago
Greedy Learning of Binary Latent Trees
—Inferring latent structures from observations helps to model and possibly also understand underlying data generating processes. A rich class of latent structures are the latent ...
Stefan Harmeling, Christopher K. I. Williams
TLDI
2003
ACM
134views Formal Methods» more  TLDI 2003»
16 years 24 days ago
Scrap your boilerplate: a practical design pattern for generic programming
We describe a design pattern for writing programs that traverse data structures built from rich mutually-recursive data types. Such programs often have a great deal of “boilerpl...
Ralf Lämmel, Simon L. Peyton Jones
ICPR
2008
IEEE
16 years 8 months ago
Robust extraction of 1D skeletons from grayscale 3D images
We propose novel thinning conditions for grayscale 3D images that do not rely on image thresholding or segmentation. The resulting grayscale skeletonization routine extracts a top...
Emilio R. Antúnez, Leonidas J. Guibas