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IPPS
2006
IEEE
16 years 1 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan
CSB
2003
IEEE
176views Bioinformatics» more  CSB 2003»
16 years 11 days ago
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings
Recognition of a protein’s fold provides valuable information about its function. While many sequence-based homology prediction methods exist, an important challenge remains: tw...
Christopher James Langmead, Bruce Randall Donald
185
Voted
BMCBI
2010
148views more  BMCBI 2010»
15 years 7 months ago
Analysis of interactions between ribosomal proteins and RNA structural motifs
Background: One important goal of structural bioinformatics is to recognize and predict the interactions between protein binding sites and RNA. Recently, a comprehensive analysis ...
Giovanni Ciriello, Claudio Gallina, Concettina Gue...
NAR
2011
256views Computer Vision» more  NAR 2011»
14 years 10 months ago
ModBase, a database of annotated comparative protein structure models, and associated resources
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models. The models are calculated by ModPipe, an automated modeling pipeline that rel...
Ursula Pieper, Benjamin M. Webb, David T. Barkan, ...
KDD
2008
ACM
183views Data Mining» more  KDD 2008»
16 years 7 months ago
Knowledge transfer via multiple model local structure mapping
The effectiveness of knowledge transfer using classification algorithms depends on the difference between the distribution that generates the training examples and the one from wh...
Jing Gao, Wei Fan, Jing Jiang, Jiawei Han