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BMCBI
2010
95views more  BMCBI 2010»
15 years 7 months ago
Protein structure modelling and evaluation based on a 4-distance description of side-chain interactions
Background: Accurate evaluation and modelling of residue-residue interactions within and between proteins is a key aspect of computational structure prediction including homology ...
Vladimir Potapov, Mati Cohen, Yuval Inbar, Gideon ...
RECOMB
2006
Springer
16 years 7 months ago
Structural Alignment of Pseudoknotted RNA
In this paper, we address the problem of discovering novel non-coding RNA (ncRNA) using primary sequence, and secondary structure conservation, focusing on ncRNA families with pseu...
Banu Dost, Buhm Han, Shaojie Zhang, Vineet Bafna
EUROGP
2005
Springer
16 years 21 days ago
Evolving L-Systems to Capture Protein Structure Native Conformations
Abstract. A protein is a linear chain of amino acids that folds into a unique functional structure, called its native state. In this state, proteins show repeated substructures lik...
Gabi Escuela, Gabriela Ochoa, Natalio Krasnogor
ANTSW
2008
Springer
15 years 9 months ago
Molecular Structure Elucidation Using Ant Colony Optimization: A Preliminary Study
Abstract. Identifying the structure of unknown molecules is an important activity in the pharmaceutical industry where it underpins the production of new drugs and the analysis of ...
Caroline Farrelly, Douglas B. Kell, Joshua D. Know...
ICML
2010
IEEE
15 years 8 months ago
Structured Output Learning with Indirect Supervision
We present a novel approach for structure prediction that addresses the difficulty of obtaining labeled structures for training. We observe that structured output problems often h...
Ming-Wei Chang, Vivek Srikumar, Dan Goldwasser, Da...