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BMCBI
2004
123views more  BMCBI 2004»
15 years 7 months ago
Interaction profile-based protein classification of death domain
Background: The increasing number of protein sequences and 3D structure obtained from genomic initiatives is leading many of us to focus on proteomics, and to dedicate our experim...
Drew Lett, Michael Hsing, Frederic Pio
ICML
2005
IEEE
16 years 8 months ago
Optimal assignment kernels for attributed molecular graphs
We propose a new kernel function for attributed molecular graphs, which is based on the idea of computing an optimal assignment from the atoms of one molecule to those of another ...
Andreas Zell, Florian Sieker, Holger Fröhlich...
RECOMB
2009
Springer
16 years 8 months ago
Simultaneous Alignment and Folding of Protein Sequences
Abstract. Accurate comparative analysis tools for low-homology proteins remains a difficult challenge in computational biology, especially sequence alignment and consensus folding ...
Bonnie Berger, Charles W. O'Donnell, Jér&oc...
ICCAD
2004
IEEE
260views Hardware» more  ICCAD 2004»
16 years 4 months ago
On interactions between routing and detailed placement
The main goal of this paper is to develop deeper insights into viable placement-level optimization of routing. Two primary contributions are made. First, an experimental framework...
Devang Jariwala, John Lillis
ICCS
2009
Springer
16 years 2 months ago
GPU Accelerated RNA Folding Algorithm
Many bioinformatics studies require the analysis of RNA or DNA structures. More specifically, extensive work is done to elaborate efficient algorithms able to predict the 2-D fold...
Guillaume Rizk, Dominique Lavenier