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200
Voted
RECOMB
2005
Springer
16 years 7 months ago
2005
Springer
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
173
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RECOMB
2002
Springer
16 years 7 months ago
2002
Springer
We introduce a model of DNA sequence evolution which can account for biases in mutation rates that depend on the identity of the neighboring bases. An analytic solution for this c...
261
Voted
RECOMB
2002
Springer
16 years 7 months ago
2002
Springer
This paper concerns the discovery of patterns in gene expression matrices, in which each element gives the expression level of a given gene in a given experiment. Most existing me...
186
Voted
STOC
2007
ACM
16 years 7 months ago
2007
ACM
In the reordering buffer problem, we are given an input sequence of requests for service each of which corresponds to a point in a metric space. The cost of serving the requests h...
172
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STOC
2005
ACM
16 years 7 months ago
2005
ACM
Set agreement, where processors decisions constitute a set of outputs, is notoriously harder to analyze than consensus where the decisions are restricted to a single output. This ...