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BMCBI
2007
119views more  BMCBI 2007»
15 years 7 months ago
Efficacy of different protein descriptors in predicting protein functional families
Background: Sequence-derived structural and physicochemical descriptors have frequently been used in machine learning prediction of protein functional families, thus there is a ne...
Serene A. K. Ong, Hong Huang Lin, Yu Zong Chen, Ze...
DCC
2007
IEEE
16 years 6 months ago
Distributed Functional Compression through Graph Coloring
We consider the distributed computation of a function of random sources with minimal communication. Specifically, given two discrete memoryless sources, X and Y , a receiver wishe...
Devavrat Shah, Muriel Médard, Sidharth Jagg...
SBBD
2008
256views Database» more  SBBD 2008»
15 years 8 months ago
Indexing Internal Memory with Minimal Perfect Hash Functions
A perfect hash function (PHF) is an injective function that maps keys from a set S to unique values, which are in turn used to index a hash table. Since no collisions occur, each k...
Fabiano C. Botelho, Hendrickson R. Langbehn, Guilh...
BMCBI
2007
137views more  BMCBI 2007»
15 years 7 months ago
Bayesian refinement of protein functional site matching
Background: Matching functional sites is a key problem for the understanding of protein function and evolution. The commonly used graph theoretic approach, and other related appro...
Kanti V. Mardia, Vysaul B. Nyirongo, Peter J. Gree...
BMCBI
2008
145views more  BMCBI 2008»
15 years 7 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...